These Apple Cider Whoopie Pie Cookies are the perfect fall-inspired treat! Soft, spiced apple cider cookies are sandwiched together with a creamy cinnamon-spiced filling, creating a delicious combination of flavors. These whoopie pies are perfect for autumn gatherings, holiday desserts, or anytime you’re craving a cozy apple treat!
Why You’ll Love This Recipe
- Warm & Cozy Flavors – Apple cider, cinnamon, and nutmeg make these cookies taste like fall.
- Soft & Fluffy – Light, cake-like cookies with a rich, creamy filling.
- Perfect for Any Occasion – Great for Thanksgiving, Halloween, or a weekend treat.
- Easy to Make – Simple ingredients and step-by-step instructions.
- Customizable – Swap out the filling or add mix-ins for a unique twist.
Ingredients
(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)
For the Apple Cider Cookies:
- Apple cider (reduced for concentrated flavor)
- All-purpose flour
- Baking soda
- Baking powder
- Salt
- Cinnamon
- Nutmeg
- Unsalted butter (softened)
- Brown sugar
- Granulated sugar
- Egg
- Vanilla extract
- Applesauce (for extra moisture)
For the Cinnamon Cream Filling:
- Unsalted butter (softened)
- Cream cheese (softened)
- Powdered sugar
- Vanilla extract
- Cinnamon
Optional Add-Ins:
- Caramel drizzle for extra sweetness
- Chopped pecans for crunch
- Apple butter mixed into the filling
Directions

Reduce the Apple Cider:
- Simmer Apple Cider – In a small saucepan, simmer 1 cup of apple cider over medium heat until reduced to about ¼ cup. Let cool.
Make the Cookies:
- Preheat Oven – Set to 350°F (175°C) and line baking sheets with parchment paper.
- Mix Dry Ingredients – In a bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, and nutmeg.
- Cream Butter & Sugars – In a separate bowl, beat butter, brown sugar, and granulated sugar until light and fluffy.
- Add Wet Ingredients – Mix in egg, vanilla, applesauce, and reduced apple cider.
- Combine Wet & Dry – Gradually mix in dry ingredients until a soft dough forms.
- Scoop & Bake – Drop spoonfuls of dough onto prepared baking sheets and bake for 10-12 minutes until set.
- Cool – Let cookies cool completely before assembling.
Make the Filling:
- Beat Butter & Cream Cheese – Mix until smooth and creamy.
- Add Powdered Sugar & Cinnamon – Beat in powdered sugar, vanilla, and cinnamon until fluffy.
Assemble the Whoopie Pies:
- Pipe or Spread Filling – Place filling on the flat side of a cookie.
- Top & Press – Sandwich with another cookie, pressing gently.
Serve & Enjoy:
- Optional Garnishes – Drizzle with caramel or roll edges in chopped nuts for extra flavor.
Servings and Timing
- Servings: 12 whoopie pies
- Prep Time: 20 minutes
- Cook Time: 12 minutes
- Total Time: 32 minutes
Variations
- Salted Caramel Apple Whoopie Pies – Add a layer of salted caramel in the filling.
- Maple Cream Filling – Replace vanilla with maple extract in the filling.
- Nutty Apple Whoopie Pies – Stir chopped walnuts or pecans into the cookie dough.
- Gluten-Free Option – Use a 1:1 gluten-free flour blend.
- Dairy-Free Version – Use dairy-free butter and cream cheese.
Storage/Reheating
- Room Temperature: Store in an airtight container for up to 2 days.
- Refrigerator: Keeps fresh for up to 5 days.
- Freezing: Freeze in a sealed container for up to 3 months. Thaw before serving.
- Serving Tip: Let refrigerated whoopie pies sit at room temperature before eating for the best texture.
FAQs
Can I use apple juice instead of apple cider?
Apple cider has a stronger flavor, but apple juice can work if reduced for concentration.
How do I prevent my cookies from spreading too much?
Chill the dough for 20 minutes before baking to keep them thick and soft.
Can I make mini whoopie pies?
Yes! Use a smaller scoop and reduce the baking time by 2-3 minutes.
Can I use whipped cream instead of cream cheese filling?
Yes, but it won’t be as stable for long-term storage.
What pairs well with these whoopie pies?
Enjoy them with a cup of hot cider, coffee, or chai tea!
How do I get a stronger apple flavor?
Make sure to reduce the apple cider, or add a bit of apple butter to the dough.
Can I make these ahead of time?
Yes! Store the cookies separately and assemble before serving for the freshest texture.
What’s the best way to get even cookies?
Use a cookie scoop for uniform size and shape.
Can I use caramel cream cheese frosting?
Absolutely! Add 2 tablespoons of caramel sauce to the filling for extra flavor.
Can I swap out the spices?
Yes! Try pumpkin spice or chai spice for a different twist.
Conclusion
These Apple Cider Whoopie Pie Cookies are a perfect fall dessert with soft, spiced cookies and a creamy cinnamon filling. Whether for a cozy afternoon snack, holiday treat, or special occasion, these whoopie pies will bring warmth and flavor to your table. Try them today and enjoy a taste of autumn in every bite!
PrintApple Cider Whoopie Pie Cookies
These Apple Cider Whoopie Pie Cookies feature soft, cake-like spiced cookies made with apple cider reduction, sandwiched together with a fluffy cinnamon cream cheese filling. They’re the ultimate fall treat—perfect for Thanksgiving, Halloween, or any cozy gathering!
- Prep Time: 15 minutes
- Chill Time: 30 minutes
- Cook Time: 12 minutes
- Total Time: 57 minutes
- Yield: 12 whoopie pies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
Ingredients
For the Cookies:
- 1 cup apple cider (to reduce to ¼ cup)
- 2 cups all-purpose flour
- 1 teaspoon baking soda
- ½ teaspoon baking powder
- ½ teaspoon salt
- 1 teaspoon cinnamon
- ½ teaspoon nutmeg
- ½ cup unsalted butter, softened
- ¾ cup brown sugar, packed
- 1 large egg
- 1 teaspoon vanilla extract
- ½ cup applesauce
For the Cinnamon Cream Cheese Filling:
- 4 oz cream cheese, softened
- ¼ cup unsalted butter, softened
- 1½ cups powdered sugar
- ½ teaspoon cinnamon
- 1 teaspoon vanilla extract
Instructions
Reduce the Apple Cider:
- Simmer the cider in a small saucepan over medium heat until it reduces to ¼ cup (about 10-15 minutes). Let cool completely.
Make the Cookies:
- Preheat & Prep: Preheat oven to 350°F (175°C). Line a baking sheet with parchment paper.
- Mix Dry Ingredients: In a bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, and nutmeg.
- Cream Butter & Sugar: In another bowl, beat butter and brown sugar until light and fluffy (about 2 minutes).
- Add Wet Ingredients: Mix in the egg, vanilla, applesauce, and cooled apple cider reduction.
- Combine Wet & Dry: Gradually add dry ingredients to the wet mixture, stirring until just combined.
- Scoop & Bake: Drop tablespoon-sized scoops onto the baking sheet, spacing them 2 inches apart. Bake for 10-12 minutes, until the tops are set. Let cool completely.
Make the Filling:
- Beat Butter & Cream Cheese: In a bowl, beat cream cheese and butter until smooth.
- Add Powdered Sugar & Cinnamon: Mix in powdered sugar, cinnamon, and vanilla until fluffy.
Assemble the Whoopie Pies:
- Fill the Cookies: Pipe or spread 1 tablespoon of filling onto the flat side of one cookie. Top with another cookie and gently press together.
- Chill & Serve: Refrigerate for 30 minutes for the best texture, or serve immediately!
Notes
- For extra apple flavor, mix 1 tablespoon apple butter into the filling.
- Want a firmer filling? Add ½ cup more powdered sugar to stiffen the cream cheese frosting.
- Storage: Store in an airtight container in the fridge for up to 5 days or freeze for up to 2 months.