Gooey cheesy pretzel bites are soft, golden-brown, and stuffed with melty cheese, making them the ultimate snack for any occasion. With a chewy pretzel exterior, a warm, cheesy center, and a sprinkle of sea salt on top, these bite-sized treats are perfect for game days, parties, or just a cozy homemade indulgence.
Why You’ll Love This Recipe
- Soft & Chewy – Classic pretzel texture with a golden crust.
- Cheesy & Gooey – Melted cheese in every bite for ultimate comfort food.
- Easy to Make – Simple ingredients and step-by-step instructions.
- Perfect for Sharing – A great party snack or appetizer.
Ingredients
(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)
For the Pretzel Dough:
- Warm water
- Active dry yeast
- Sugar
- All-purpose flour
- Salt
- Butter, melted
For the Cheese Filling:
- Cheddar cheese, cubed
- Mozzarella or pepper jack (for variety)
For the Pretzel Bath:
- Baking soda
- Boiling water
For the Topping:
- Coarse sea salt
- Egg wash (egg + water, whisked)
- Melted butter (for brushing, optional)
Directions

Make the Pretzel Dough:
- Activate Yeast – In a bowl, mix warm water, yeast, and sugar. Let sit for 5 minutes until frothy.
- Mix Dough – Add flour, salt, and melted butter. Knead for 5-7 minutes until smooth. Cover and let rise for 1 hour.
Shape & Fill the Pretzel Bites:
- Preheat Oven – Set to 400°F (200°C) and line a baking sheet with parchment paper.
- Cut Dough – Punch down dough and divide into small pieces. Flatten each piece and place a cube of cheese inside.
- Seal & Roll – Pinch edges together and roll into a ball.
Boil the Pretzels:
- Prepare Baking Soda Bath – Boil water and add baking soda.
- Dip Pretzel Bites – Drop each piece into the boiling water for 20-30 seconds, then remove and place on a baking sheet.
Bake & Serve:
- Brush with Egg Wash – This gives a golden brown finish.
- Sprinkle with Sea Salt – Add just enough for the perfect salty contrast.
- Bake – Bake for 12-15 minutes until golden brown.
- Brush with Butter (Optional) – For extra flavor and shine.
Servings and Timing
- Servings: 24 pretzel bites
- Prep Time: 20 minutes
- Rise Time: 1 hour
- Cook Time: 15 minutes
- Total Time: 1 hour 35 minutes
Variations
- Spicy Cheese Bites – Use pepper jack or add jalapeños inside.
- Garlic Butter Pretzels – Brush with garlic butter instead of plain butter.
- Sweet Pretzel Bites – Swap sea salt for cinnamon sugar and fill with cream cheese.
- Stuffed Pizza Pretzels – Fill with mozzarella and pepperoni.
Storage/Reheating
- Refrigerate – Store in an airtight container for up to 3 days.
- Freeze – Freeze unbaked bites and bake when ready.
- Reheat – Warm in the oven at 350°F for 5 minutes or microwave for 15 seconds.
FAQs
Can I use store-bought dough?
Yes! Pizza dough works well as a shortcut.
Why do I need to boil the pretzels?
The baking soda bath gives the pretzels their signature chewy texture and golden color.
Can I use different cheeses?
Absolutely! Try gouda, brie, or even blue cheese for a unique twist.
How do I keep the cheese from leaking out?
Seal the dough tightly and ensure the cheese is fully enclosed.
Can I make these ahead of time?
Yes! Assemble and freeze, then bake fresh when needed.
Can I make these without yeast?
A quick dough using self-rising flour and Greek yogurt can work in a pinch.
What dipping sauces go well with these?
Cheese sauce, honey mustard, marinara, or ranch are great choices.
Can I make these in an air fryer?
Yes! Air fry at 375°F for 8-10 minutes until golden brown.
How do I make them extra soft?
Brush with butter right after baking to keep them soft and flavorful.
Can I use whole wheat flour?
Yes, but the texture will be denser. Try a mix of whole wheat and all-purpose flour for a balance.
Conclusion
Gooey cheesy pretzel bites with sea salt topping are the ultimate snack, combining soft pretzels with melty cheese in every bite. Whether you’re making them for a party, game night, or just because, these easy homemade treats are guaranteed to be a crowd-pleaser. Try them today for the perfect cheesy, salty, and delicious snack!
PrintGooey Cheesy Pretzel Bites with Sea Salt Topping
These Gooey Cheesy Pretzel Bites are soft, golden-brown, and stuffed with melty cheese, then topped with flaky sea salt. Perfect as a snack, appetizer, or game-day treat!
- Prep Time: 15 minutes
- Chill Time: 1 hour
- Cook Time: 20 minutes
- Total Time: 1 hour 35 minutes
- Yield: 24–30 pretzel bites 1x
- Category: Appetizer, Snack
- Method: Baking
- Cuisine: American, German-Inspired
Ingredients
For the Pretzel Dough:
- 2 ¼ teaspoons (1 packet) active dry yeast
- 1 cup warm water (110°F/43°C)
- 2 tablespoons granulated sugar
- 2 ½ cups all-purpose flour
- 1 teaspoon salt
- 1 tablespoon unsalted butter, melted
For the Cheese Filling:
- 6 oz block cheese (cheddar, mozzarella, or pepper jack), cut into ½-inch cubes
For the Baking Soda Bath:
- 4 cups water
- ¼ cup baking soda
For Topping:
- 1 egg, beaten (for egg wash)
- 1 tablespoon coarse sea salt or pretzel salt
- 2 tablespoons unsalted butter, melted (for brushing)
Instructions
Make the Pretzel Dough:
Activate the Yeast:
In a bowl, stir together warm water, yeast, and sugar. Let sit for 5 minutes until foamy.
Mix & Knead Dough:
Add flour, salt, and melted butter to the yeast mixture. Mix until combined.
Knead for 5-7 minutes, until smooth and elastic.
Cover and let rise for 1 hour, until doubled in size.
Assemble the Pretzel Bites:
Cut & Stuff the Dough:
Preheat oven to 425°F (220°C).
Line a baking sheet with parchment paper.
Punch down dough and divide into 4 equal sections. Roll each section into a rope and cut into 1-inch pieces.
Flatten each piece, place a cheese cube inside, and pinch edges tightly to seal.
Baking Soda Bath:
Boil for Pretzel Texture:
Bring 4 cups of water to a boil. Stir in baking soda.
Drop pretzel bites in, a few at a time, for 20-30 seconds. Remove with a slotted spoon and place on baking sheet.
Bake & Serve:
Bake Until Golden:
Brush bites with egg wash and sprinkle with sea salt.
Bake for 12-15 minutes, or until deep golden brown.
Add Buttery Finish:
Brush hot pretzels with melted butter.
Serve warm with cheese dip, mustard, or ranch!
Notes
- Want extra gooey cheese? Use string cheese for the filling!
- Make them spicy by adding a pinch of cayenne to the dough.
- Storage: Best enjoyed fresh but can be reheated at 350°F for 5 minutes.